Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs148372620 | chr14:36166541 | TTTTTG/T | 5.07E-6 | 490 | 15.97 | 16.07 | 8.33 | KM Plot |
| THCA | rs148441289 | chr16:2958461 | A/C | 0.000172 | 485 | 15.63 | 16.83 | 15.4 | KM Plot |
| THCA | rs148516982 | chr1:224374946 | G/T | 7.69E-5 | 489 | 16.67 | 14.63 | 13.8 | KM Plot |
| THCA | rs148558753 | chr1:45910588 | C/CT | 7.49E-7 | 487 | 16.37 | 13.7 | 17.7 | KM Plot |
| THCA | rs148568335 | chr1:91837745 | C/T | 3.76E-5 | 482 | 17.07 | 17.13 | 15.3 | KM Plot |
| THCA | rs148574554 | chr17:57375766 | C/T | 3.82E-9 | 480 | 15.9 | 15.9 | 16.98 | KM Plot |
| THCA | rs148610433 | chr19:43562223 | C/T | 0.000237 | 489 | 15.3 | 18.93 | 10.08 | KM Plot |
| THCA | rs148645743 | chr13:24959645 | T/TG | 0.000206 | 486 | 15 | 17.77 | 20.88 | KM Plot |
| THCA | rs148647975 | chr3:122119972 | TTTTC/T | 9.5E-7 | 482 | 16.57 | 15.08 | 5.93 | KM Plot |
| THCA | rs148690632 | chr1:41677215 | T/C | 2.8E-7 | 490 | 14.92 | 17.77 | 17.47 | KM Plot |
| THCA | rs148932331 | chr1:91764964 | C/G | 8.35E-6 | 487 | 15.63 | 17.03 | 17.77 | KM Plot |
| THCA | rs148993886 | chr6:24428126 | C/CA | 6.19E-7 | 481 | 16.27 | 14.9 | 9.25 | KM Plot |
| THCA | rs149039273 | chr16:15184257 | T/C | 0.000143 | 487 | 16.63 | 14 | 14.9 | KM Plot |
| THCA | rs149106202 | chr14:59826664 | CA/C | 0.000221 | 488 | 16.25 | 15 | 5.8 | KM Plot |
| THCA | rs1491160 | chr3:56559580 | G/A | 6.08E-5 | 488 | 16.67 | 12.6 | 8.97 | KM Plot |